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OpenSwathAnalyzer

Executes a peak-picking and scoring algorithm on MRM/SRM data.

potential predecessor tools $ \longrightarrow $ OpenSwathAnalyzer $ \longrightarrow $ potential successor tools
OpenSwathChromatogramExtractor OpenSwathFeatureXMLToTSV
MRMMapper OpenSwathConfidenceScoring

The idea of the OpenSwath Analyzer is to analyze a series of chromatograms together with the associated meta information (stored in TraML format) in order to determine likely places of elution of a peptide in targeted proteomics data (derived from SWATH-MS or MRM/SRM).

The command line parameters of this tool are:

The algorithm parameters for the Analyzer filter are:


OpenMS / TOPP release 2.3.0 Documentation generated on Wed Aug 22 2018 21:04:33 using doxygen 1.8.14